In a discovery that's rewriting agricultural history, scientists have finally solved one of botany's most enduring mysteries: where potatoes really come from. The answer might surprise you – these beloved tubers we enjoy as fries, chips, and countless other dishes actually evolved from an ancient tomato ancestor approximately 9 million years ago.
This groundbreaking revelation comes from an international research team led by Professor Sanwen Huang at the Agricultural Genomics Institute in Shenzhen, China, working alongside scientists from Canada and the United Kingdom. Their comprehensive study, published in the prestigious journal Cell, analyzed over 450 genomes from wild and cultivated potato species to uncover this remarkable evolutionary tale.
How Ancient Plant Romance Created Modern Potatoes
The story begins in the rugged Andes mountains of South America, where two very different plant species crossed paths around 9 million years ago. Wild tomatoes, thriving in the mountainous terrain, encountered a potato-like plant called Etuberosum through what scientists call a hybridization event.
"Tomato is the mother and Etuberosum is the father," explains Professor Huang, describing this ancient botanical union. "But this wasn't obvious at first."
Dr. Sandra Knapp, a botanist at London's Natural History Museum and study co-author, describes the process poetically: "It's like shuffling a deck of cards again, and different cards come up in different combinations. And fortunately for this particular hybridization event, two sorts of genes came together, which created the ability to tuberize."
The hybridization likely occurred when a bee carried pollen between the two species, according to Amy Charkowski, research associate dean at Colorado State University's College of Agricultural Sciences. This chance encounter would ultimately feed billions of people worldwide.
The Genetic Mystery That Puzzled Scientists for Decades
Before this discovery, potato origins remained one of science's most perplexing puzzles. While potato plants visually resembled Etuberosum species almost identically above ground, genetic analysis revealed they were actually more closely related to tomatoes – a contradiction that baffled researchers for years.
"We couldn't resolve the contradiction for a long time," admits Zhiyang Zhang, a biologist at the Chinese Academy of Agricultural Sciences and lead study author. The research team had to analyze 101 genomes and 349 resequenced samples from cultivated potatoes and 56 wild potato species to crack this genetic code.
The breakthrough came when scientists realized that every potato species examined contained a stable, balanced genetic contribution from both parent plants – tomatoes and Etuberosum – suggesting all potatoes descended from this single ancient hybrid event.
The Revolutionary Birth of Tubers: A New Plant Organ
Perhaps the most remarkable aspect of this evolutionary story is how the hybridization created something entirely new: the tuber. Neither tomatoes nor Etuberosum could produce these underground storage organs, yet their hybrid offspring developed this crucial capability.
The secret lies in two specific genes working in perfect harmony. The tomato parent contributed the SP6A gene, which acts as a "master switch" telling the plant to start making tubers. Meanwhile, Etuberosum provided the IT1 gene, controlling the growth of underground stems that form the starchy tubers we eat today.
"If either gene were missing or didn't work in concert, potatoes never would have formed tubers," explains Jian-Quan Liu, professor at Lanzhou University's college of ecology.
This genetic innovation gave potatoes a tremendous evolutionary advantage. As C. Robin Buell, a plant-genomics expert at the University of Georgia, notes: "That's what a tuber does for you—it allows you to survive better in stressful conditions."
From Mountain Slopes to Global Dominance
The timing of this hybridization proved fortuitous. The event coincided with the rapid rise of the Andes mountains due to tectonic plate interactions, creating diverse ecosystems and challenging environments. While ancient tomatoes preferred dry, hot conditions and Etuberosum favored temperate spaces, the hybrid potato thrived in the cold, dry, high-altitude habitats emerging across the mountain range.
Tubers provided these early potatoes with several survival advantages:
- Energy storage for surviving harsh winters and droughts
- Asexual reproduction capability without needing seeds or pollinators
- Adaptation to diverse environmental conditions
- Spread across vast geographical areas
This evolutionary success led to an explosion of diversity. Today, over 100 wild potato species exist, though not all produce edible tubers due to natural toxins.
Indigenous Wisdom and Global Spread
Indigenous peoples in the Andes recognized potatoes' potential thousands of years ago, domesticating multiple species and developing hundreds of varieties. Dr. Sandra Knapp notes the contrast: "The Indigenous people in the Andes have hundreds of varieties of potatoes. In Europe, we have maybe five – all from one species: Solanum tuberosum."
Spanish conquistadors brought potatoes to Europe in the 16th century, though initial reception was skeptical. Europeans were suspicious of this underground-growing crop that wasn't mentioned in the Bible and looked unfamiliar. However, potatoes soon proved their worth through excellent nutrition and resilience in poor growing conditions, eventually becoming a staple worldwide.
Modern Implications: Feeding the Future
Today, potatoes rank as the world's third-most important staple crop, along with wheat, rice, and maize, providing 80% of human caloric intake globally. Understanding their evolutionary origins could prove crucial for future food security.
The research team is already applying these insights practically. "We're working on a project that helps potatoes reproduce by seeds," reveals Professor Huang. "And we're putting the IT1 and other necessary genes from potato into tomato, so it can grow tubers."
This genetic knowledge could help develop:
- Disease-resistant potato varieties
- Climate-change-adapted crops
- More nutritious potato strains
- Sustainable agricultural practices
As James Mallet, professor of organismic and evolutionary biology at Harvard University, emphasizes: "The study is groundbreaking. It shows how a hybridization event can spark the emergence of a new organ – and even lead to new lineage with many species."
Conclusion: A Love Story That Fed the World
This 9-million-year-old romance between tomatoes and Etuberosum created one of humanity's most important food sources. From a chance encounter in the ancient Andes to feeding billions globally, potatoes represent evolution's remarkable creativity and nature's ability to innovate through genetic diversity.
As we face modern challenges like climate change and population growth, understanding these evolutionary success stories becomes increasingly valuable. The humble potato's journey from ancient hybrid to global staple reminds us that sometimes the most unexpected combinations create the most extraordinary results.
Next time you enjoy french fries with ketchup, remember – you're essentially reuniting a plant family that evolution separated millions of years ago.

